Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0805566.4b with 1 members (ER membrane protein complex subunit)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria / Perissodactyla /

Equus

Completeness score: 0.50

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This HOG has 71 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0805566.4b	86	136	ER membrane protein complex subunit
2	HOG:E0805566	49	659	ER membrane protein complex subunit
3	HOG:E0805566.2b	37	127	ER membrane protein complex subunit
4	HOG:E0805566.4a.19b	25	85	ER membrane protein complex subunit
5	HOG:E0805566.4b.27a	22	22	ER membrane protein complex subunit
6	HOG:E0805566.2b.3b	14	28	ER membrane protein complex subunit
7	HOG:E0805566.4b.26a	13	13	ER membrane protein complex subunit
8	HOG:E0805566.4a.18c	13	15	ER membrane protein complex subunit
9	HOG:E0805566.2b.12b	4	11	ER membrane protein complex subunit
10	HOG:E0805566.2b.11c	4	6	ER membrane protein complex subunit
11	HOG:E0805566.4a	3	299	ER membrane protein complex subunit
12	HOG:E0805566.1b	3	5	ER membrane protein complex subunit
13	HOG:E0805566.4b.21b	2	2	ER membrane protein complex subunit
14	HOG:E0805566.4b.21a	2	2	ER membrane protein complex subunit
15	HOG:E0805566.2b.2b	2	3	ER membrane protein complex subunit
16	HOG:E0805566.2b.12b.8b	2	4	ER membrane protein complex subunit
17	HOG:E0805566.2b.12b.8a	2	3	ER membrane protein complex subunit
18	HOG:E0805566.2b.11a	2	3	ER membrane protein complex subunit
19	HOG:E0805566.4b.25a	1	1	ER membrane protein complex subunit
20	HOG:E0805566.4b.24b	1	1	ER membrane protein complex subunit
21	HOG:E0805566.4b.24a	1	1	ER membrane protein complex subunit
22	HOG:E0805566.4b.23b	1	1	ER membrane protein complex subunit
23	HOG:E0805566.4b.23a	1	1	ER membrane protein complex subunit
24	HOG:E0805566.4b.22b	1	1	ER membrane protein complex subunit
25	HOG:E0805566.4b.22a	1	1	ER membrane protein complex subunit

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